IL_9F1C_106

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

AUC*GU

Length

5 nucleotides

Bulged bases

9F1C|1|B5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_106 not in the Motif Atlas

Homologous match to IL_8C3A_003

Geometric discrepancy: 0.1839

The information below is about IL_8C3A_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9F1C|1|B5|A|12
9F1C|1|B5|U|13
9F1C|1|B5|C|14
*
9F1C|1|B8|G|143
9F1C|1|B8|U|144

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15

Chain BX

Large ribosomal subunit protein uL23