IL_9F1C_125

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GCG*UC

Length

5 nucleotides

Bulged bases

9F1C|1|B5|C|449

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_125 not in the Motif Atlas

Geometric match to IL_4C7O_003

Geometric discrepancy: 0.3486

The information below is about IL_4C7O_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

9F1C|1|B5|G|448
9F1C|1|B5|C|449
9F1C|1|B5|G|450
*
9F1C|1|B5|U|1241
9F1C|1|B5|C|1242

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Be

Ribosomal protein L32

Chain Bf

60S ribosomal protein L35a