IL_9F1C_129

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9F1C|1|B5|U|482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_129 not in the Motif Atlas

Geometric match to IL_2R8S_004

Geometric discrepancy: 0.2677

The information below is about IL_2R8S_004

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

9F1C|1|B5|G|481
9F1C|1|B5|U|482
9F1C|1|B5|G|483
*
9F1C|1|B5|C|666
9F1C|1|B5|C|667

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Br

60S ribosomal protein L28