IL_9F1C_131

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

9F1C|1|B5|G|660, 9F1C|1|B5|A|661, 9F1C|1|B5|C|662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_131 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1981

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9F1C|1|B5|G|488
9F1C|1|B5|G|489
*
9F1C|1|B5|C|659
9F1C|1|B5|G|660
9F1C|1|B5|A|661
9F1C|1|B5|C|662
9F1C|1|B5|C|663

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BQ

Large ribosomal subunit protein eL18

Chain Br

60S ribosomal protein L28