IL_9F1C_190

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9F1C|1|B5|U|1886

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_190 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.0682

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9F1C|1|B5|G|1885
9F1C|1|B5|U|1886
9F1C|1|B5|G|1887
*
9F1C|1|B5|C|1974
9F1C|1|B5|C|1975

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BH

60S ribosomal protein L9

Chain BS

Large ribosomal subunit protein eL20

Chain Bm

Large ribosomal subunit protein eL40