IL_9F1C_241

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

GAA*UACC

Length

7 nucleotides

Bulged bases

9F1C|1|B5|A|3633, 9F1C|1|B5|C|4306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_241 not in the Motif Atlas

Geometric match to IL_5TBW_092

Geometric discrepancy: 0.1402

The information below is about IL_5TBW_092

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_54678.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9F1C|1|B5|G|3632
9F1C|1|B5|A|3633
9F1C|1|B5|A|3634
*
9F1C|1|B5|U|4304
9F1C|1|B5|A|4305
9F1C|1|B5|C|4306
9F1C|1|B5|C|4307

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BB

Ribosomal protein L3

Chain BP

Large ribosomal subunit protein uL22