IL_9F1C_300

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

AUCUC*GAUCU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_300 not in the Motif Atlas

Homologous match to IL_8VTW_113

Geometric discrepancy: 0.1339

The information below is about IL_8VTW_113

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_58103.9

Basepair signature

cWW-cSH-cWS-tSW-L-R-cWW-R

Number of instances in this motif group

9

Unit IDs

9F1C|1|B7|A|32
9F1C|1|B7|U|33
9F1C|1|B7|C|34
9F1C|1|B7|U|35
9F1C|1|B7|C|36
*
9F1C|1|B7|G|41
9F1C|1|B7|A|42
9F1C|1|B7|U|43
9F1C|1|B7|C|44
9F1C|1|B7|U|45

Current chains

Chain B7

5S rRNA

Nearby chains

Chain B

Large ribosomal subunit protein uL18

Chain B5

Large subunit ribosomal RNA; LSU rRNA

Chain BJ

60S ribosomal protein L11