IL_9F1C_358

3D structure

PDB id

9F1C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E

Experimental method

ELECTRON MICROSCOPY

Resolution

3.78 Å

Loop

Sequence

(PSU)UG*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1C_358 not in the Motif Atlas

Homologous match to IL_8C3A_112

Geometric discrepancy: 0.1582

The information below is about IL_8C3A_112

Detailed Annotation

Major groove platform

Broad Annotation

Major groove platform

Motif group

IL_48779.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

9F1C|1|B5|PSU|4149
9F1C|1|B5|U|4150
9F1C|1|B5|G|4151
*
9F1C|1|B5|U|4185
9F1C|1|B5|G|4186

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BI

60S ribosomal protein L10