IL_9F1D_031

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

9F1D|1|A2|U|608

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_031 not in the Motif Atlas

Geometric match to IL_7RQB_038

Geometric discrepancy: 0.3325

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

9F1D|1|A2|G|607
9F1D|1|A2|U|608
9F1D|1|A2|C|609
*
9F1D|1|A2|G|636
9F1D|1|A2|C|637

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AD

40S ribosomal protein S30

Chain Ac

40S ribosomal protein S3

Chain Ai

40S ribosomal protein S9