IL_9F1D_073

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

9F1D|1|A2|C|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_073 not in the Motif Atlas

Geometric match to IL_4V88_450

Geometric discrepancy: 0.142

The information below is about IL_4V88_450

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_76319.2

Basepair signature

cWW-L-cWS-cWW

Number of instances in this motif group

4

Unit IDs

9F1D|1|A2|U|1330
9F1D|1|A2|G|1331
9F1D|1|A2|C|1332
9F1D|1|A2|A|1333
9F1D|1|A2|U|1334
*
9F1D|1|A2|A|1499
9F1D|1|A2|U|1500
9F1D|1|A2|G|1501

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AC

Ribosomal protein S27a

Chain AG

40S ribosomal protein S29

Chain Ac

40S ribosomal protein S3

Chain Aj

S10_plectin domain-containing protein

Chain At

40S ribosomal protein uS10