IL_9F1D_080

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UA*UCCCCCA

Length

9 nucleotides

Bulged bases

9F1D|1|A2|C|1434, 9F1D|1|A2|C|1435, 9F1D|1|A2|C|1438

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_080 not in the Motif Atlas

Geometric match to IL_5WTK_001

Geometric discrepancy: 0.2657

The information below is about IL_5WTK_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.5

Basepair signature

cWW-cWW

Number of instances in this motif group

31

Unit IDs

9F1D|1|A2|U|1409
9F1D|1|A2|A|1410
*
9F1D|1|A2|U|1433
9F1D|1|A2|C|1434
9F1D|1|A2|C|1435
9F1D|1|A2|C|1436
9F1D|1|A2|C|1437
9F1D|1|A2|C|1438
9F1D|1|A2|A|1439

Current chains

Chain A2

18S rRNA

Nearby chains

Chain Ap

Small ribosomal subunit protein uS9

Chain At

40S ribosomal protein uS10