IL_9F1D_119
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 9F1D|1|B5|G|409, 9F1D|1|B5|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1D_119 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.1481
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
9F1D|1|B5|G|387
9F1D|1|B5|A|388
9F1D|1|B5|A|389
9F1D|1|B5|C|390
*
9F1D|1|B5|G|401
9F1D|1|B5|A|402
9F1D|1|B5|G|403
9F1D|1|B5|U|404
9F1D|1|B5|U|405
9F1D|1|B5|C|406
9F1D|1|B5|A|407
9F1D|1|B5|A|408
9F1D|1|B5|G|409
9F1D|1|B5|A|410
9F1D|1|B5|G|411
9F1D|1|B5|G|412
9F1D|1|B5|G|413
9F1D|1|B5|C|414
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain B8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain BK
- Nascent chain
- Chain BP
- Large ribosomal subunit protein uL22
- Chain BY
- Ribosomal protein L26
- Chain Bl
- 60S ribosomal protein L39-like
- Chain Cu
- Transcription factor BTF3
- Chain DB
- N-alpha-acetyltransferase 15, NatA auxiliary subunit
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