IL_9F1D_130

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

9F1D|1|B5|U|493

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_130 not in the Motif Atlas

Geometric match to IL_2ZY6_002

Geometric discrepancy: 0.368

The information below is about IL_2ZY6_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

9F1D|1|B5|G|492
9F1D|1|B5|U|493
9F1D|1|B5|G|494
*
9F1D|1|B5|C|655
9F1D|1|B5|C|656

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BQ

Large ribosomal subunit protein eL18