IL_9F1D_133

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GAU*AC

Length

5 nucleotides

Bulged bases

9F1D|1|B5|A|511

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_133 not in the Motif Atlas

Geometric match to IL_6WPI_001

Geometric discrepancy: 0.2327

The information below is about IL_6WPI_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

9F1D|1|B5|G|510
9F1D|1|B5|A|511
9F1D|1|B5|U|512
*
9F1D|1|B5|A|643
9F1D|1|B5|C|644

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Large ribosomal subunit protein eL13

Chain Ba

60S ribosomal protein L27a