IL_9F1D_135

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UC*GUCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_135 not in the Motif Atlas

Geometric match to IL_5TBW_119

Geometric discrepancy: 0.2382

The information below is about IL_5TBW_119

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

9F1D|1|B5|U|522
9F1D|1|B5|C|523
*
9F1D|1|B5|G|632
9F1D|1|B5|U|633
9F1D|1|B5|C|634
9F1D|1|B5|G|635

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Large ribosomal subunit protein eL13