IL_9F1D_142

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CCCG*CCCG

Length

8 nucleotides

Bulged bases

9F1D|1|B5|C|732, 9F1D|1|B5|C|733, 9F1D|1|B5|C|823, 9F1D|1|B5|C|824

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_142 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.3656

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

9F1D|1|B5|C|731
9F1D|1|B5|C|732
9F1D|1|B5|C|733
9F1D|1|B5|G|734
*
9F1D|1|B5|C|822
9F1D|1|B5|C|823
9F1D|1|B5|C|824
9F1D|1|B5|G|825

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BM

60S ribosomal protein L14