IL_9F1D_150

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

9F1D|1|B5|U|1090

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_150 not in the Motif Atlas

Geometric match to IL_4V88_439

Geometric discrepancy: 0.3522

The information below is about IL_4V88_439

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

9F1D|1|B5|C|1011
9F1D|1|B5|C|1012
*
9F1D|1|B5|G|1089
9F1D|1|B5|U|1090
9F1D|1|B5|G|1091

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BF

Ribosomal Protein uL30

Chain BS

Large ribosomal subunit protein eL20

Chain BT

60S ribosomal protein L21