IL_9F1D_154

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GG*CGCC

Length

6 nucleotides

Bulged bases

9F1D|1|B5|C|1322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_154 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2126

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9F1D|1|B5|G|1304
9F1D|1|B5|G|1305
*
9F1D|1|B5|C|1320
9F1D|1|B5|G|1321
9F1D|1|B5|C|1322
9F1D|1|B5|C|1323

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BL

Large ribosomal subunit protein eL13

Chain BN

Ribosomal protein L15