IL_9F1D_158

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GCC*GC

Length

5 nucleotides

Bulged bases

9F1D|1|B5|C|1391

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_158 not in the Motif Atlas

Geometric match to IL_1S03_006

Geometric discrepancy: 0.3385

The information below is about IL_1S03_006

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

50

Unit IDs

9F1D|1|B5|G|1390
9F1D|1|B5|C|1391
9F1D|1|B5|C|1392
*
9F1D|1|B5|G|1403
9F1D|1|B5|C|1404

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BF

Ribosomal Protein uL30

Chain BQ

Large ribosomal subunit protein eL18

Chain Bb

60S ribosomal protein L29