IL_9F1D_191

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GUGGC*GAAUC

Length

10 nucleotides

Bulged bases

9F1D|1|B5|G|1914

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_191 not in the Motif Atlas

Homologous match to IL_8C3A_058

Geometric discrepancy: 0.3585

The information below is about IL_8C3A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30542.5

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

9F1D|1|B5|G|1912
9F1D|1|B5|U|1913
9F1D|1|B5|G|1914
9F1D|1|B5|G|1915
9F1D|1|B5|C|1916
*
9F1D|1|B5|G|1928
9F1D|1|B5|A|1929
9F1D|1|B5|A|1930
9F1D|1|B5|U|1931
9F1D|1|B5|C|1932

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bs

Large ribosomal subunit protein uL10

Chain Bt

60S ribosomal protein L12