IL_9F1D_210

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CAG*CGUG

Length

7 nucleotides

Bulged bases

9F1D|1|B5|U|2530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_210 not in the Motif Atlas

Geometric match to IL_4V9F_076

Geometric discrepancy: 0.1239

The information below is about IL_4V9F_076

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_87316.1

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

12

Unit IDs

9F1D|1|B5|C|2489
9F1D|1|B5|A|2490
9F1D|1|B5|G|2491
*
9F1D|1|B5|C|2528
9F1D|1|B5|G|2529
9F1D|1|B5|U|2530
9F1D|1|B5|G|2531

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bg

60S ribosomal protein L34