IL_9F1D_230

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

9F1D|1|B5|A|3443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_230 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.3617

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

9F1D|1|B5|G|3442
9F1D|1|B5|A|3443
9F1D|1|B5|A|3444
9F1D|1|B5|U|3445
9F1D|1|B5|G|3446
*
9F1D|1|B5|C|3471
9F1D|1|B5|G|3472
9F1D|1|B5|C|3473

Current chains

Chain B5

28S rRNA

Nearby chains

Chain A2

Small subunit ribosomal RNA; SSU rRNA

Chain Aa

40S ribosomal protein S3a

Chain BA

Large ribosomal subunit protein uL2