IL_9F1D_241

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9F1D|1|B5|A|4131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_241 not in the Motif Atlas

Homologous match to IL_5TBW_094

Geometric discrepancy: 0.0906

The information below is about IL_5TBW_094

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_18604.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

46

Unit IDs

9F1D|1|B5|G|3648
9F1D|1|B5|A|3649
*
9F1D|1|B5|U|4130
9F1D|1|B5|A|4131
9F1D|1|B5|C|4132
9F1D|1|B5|C|4133

Current chains

Chain B5

28S rRNA

Nearby chains

Chain AT

P-site tRNA

Chain BA

Large ribosomal subunit protein uL2