IL_9F1D_243

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

9F1D|1|B5|G|3929

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_243 not in the Motif Atlas

Homologous match to IL_5TBW_095

Geometric discrepancy: 0.1003

The information below is about IL_5TBW_095

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

9F1D|1|B5|U|3659
9F1D|1|B5|A|3660
9F1D|1|B5|G|3661
*
9F1D|1|B5|U|3927
9F1D|1|B5|G|3928
9F1D|1|B5|G|3929
9F1D|1|B5|G|3930

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain BN

Ribosomal protein L15

Chain Bo

Large ribosomal subunit protein eL42