IL_9F1D_252

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

9F1D|1|B5|A|4038

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_252 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1328

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_31737.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9F1D|1|B5|G|4037
9F1D|1|B5|A|4038
9F1D|1|B5|PSU|4039
9F1D|1|B5|C|4040
*
9F1D|1|B5|G|4062
9F1D|1|B5|A|4063
9F1D|1|B5|C|4064

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BT

60S ribosomal protein L21

Chain Bb

60S ribosomal protein L29

Chain Bo

Large ribosomal subunit protein eL42