IL_9F1D_254

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GAGC*GC

Length

6 nucleotides

Bulged bases

9F1D|1|B5|G|4095

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_254 not in the Motif Atlas

Geometric match to IL_7RQB_058

Geometric discrepancy: 0.2482

The information below is about IL_7RQB_058

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_76488.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

36

Unit IDs

9F1D|1|B5|G|4093
9F1D|1|B5|A|4094
9F1D|1|B5|G|4095
9F1D|1|B5|C|4096
*
9F1D|1|B5|G|4110
9F1D|1|B5|C|4111

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BL

Large ribosomal subunit protein eL13

Chain BQ

Large ribosomal subunit protein eL18

Chain Ba

60S ribosomal protein L27a

Chain Bo

Large ribosomal subunit protein eL42