IL_9F1D_276

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_276 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1557

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

39

Unit IDs

9F1D|1|B5|U|4384
9F1D|1|B5|G|4385
9F1D|1|B5|C|4386
*
9F1D|1|B5|G|4405
9F1D|1|B5|G|4406
9F1D|1|B5|G|4407

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BW

Ribosomal protein L24

Chain Bd

60S ribosomal protein L31