IL_9F1D_283
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- CCUCGGAUAGC*GUGCGGAGAG
- Length
- 21 nucleotides
- Bulged bases
- 9F1D|1|B5|C|4504, 9F1D|1|B5|U|4505, 9F1D|1|B5|A|4511, 9F1D|1|B5|G|4609, 9F1D|1|B5|C|4610, 9F1D|1|B5|G|4612, 9F1D|1|B5|A|4615
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1D_283 not in the Motif Atlas
- Homologous match to IL_8P9A_352
- Geometric discrepancy: 0.57
- The information below is about IL_8P9A_352
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28855.1
- Basepair signature
- cWW-L-R-L-cWW-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
9F1D|1|B5|C|4503
9F1D|1|B5|C|4504
9F1D|1|B5|U|4505
9F1D|1|B5|C|4506
9F1D|1|B5|G|4507
9F1D|1|B5|G|4508
9F1D|1|B5|A|4509
9F1D|1|B5|U|4510
9F1D|1|B5|A|4511
9F1D|1|B5|G|4512
9F1D|1|B5|C|4513
*
9F1D|1|B5|G|4607
9F1D|1|B5|U|4608
9F1D|1|B5|G|4609
9F1D|1|B5|C|4610
9F1D|1|B5|G|4611
9F1D|1|B5|G|4612
9F1D|1|B5|A|4613
9F1D|1|B5|G|4614
9F1D|1|B5|A|4615
9F1D|1|B5|G|4616
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BE
- 60S ribosomal protein L6
- Chain BH
- 60S ribosomal protein L9
- Chain BM
- 60S ribosomal protein L14
- Chain BO
- Large ribosomal subunit protein uL13
- Chain BS
- Large ribosomal subunit protein eL20
Coloring options: