IL_9F1D_331

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GAUC*GUC

Length

7 nucleotides

Bulged bases

9F1D|1|B5|U|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_331 not in the Motif Atlas

Geometric match to IL_4X4N_005

Geometric discrepancy: 0.2211

The information below is about IL_4X4N_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9F1D|1|B5|G|11
9F1D|1|B5|A|12
9F1D|1|B5|U|13
9F1D|1|B5|C|14
*
9F1D|1|B8|G|143
9F1D|1|B8|U|144
9F1D|1|B8|C|145

Current chains

Chain B5

28S rRNA

Chain B8

5.8S rRNA

Nearby chains

Chain BG

Large ribosomal subunit protein eL8

Chain BN

Ribosomal protein L15

Chain BX

Large ribosomal subunit protein uL23