IL_9F1D_334

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

AC*GAAU

Length

6 nucleotides

Bulged bases

9F1D|1|B5|A|843, 9F1D|1|B5|A|844

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_334 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.2402

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9F1D|1|B5|A|717
9F1D|1|B5|C|718
*
9F1D|1|B5|G|842
9F1D|1|B5|A|843
9F1D|1|B5|A|844
9F1D|1|B5|U|845

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BC

60S ribosomal protein L4

Chain BF

Ribosomal Protein uL30