IL_9F1D_350
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- GGAA*U(OMC)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9F1D_350 not in the Motif Atlas
- Geometric match to IL_8C3A_082
- Geometric discrepancy: 0.103
- The information below is about IL_8C3A_082
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.4
- Basepair signature
- cWW-cWW-tSH-cWW-R
- Number of instances in this motif group
- 28
Unit IDs
9F1D|1|B5|G|2690
9F1D|1|B5|G|2691
9F1D|1|B5|A|2692
9F1D|1|B5|A|2693
*
9F1D|1|B5|U|3572
9F1D|1|B5|OMC|3573
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain BB
- Ribosomal protein L3
- Chain BV
- Ribosomal protein L23
Coloring options: