3D structure

PDB id
9F1D (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
Experimental method
ELECTRON MICROSCOPY
Resolution
3.26 Å

Loop

Sequence
GGAA*U(OMC)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9F1D_350 not in the Motif Atlas
Geometric match to IL_8C3A_082
Geometric discrepancy: 0.103
The information below is about IL_8C3A_082
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_50694.4
Basepair signature
cWW-cWW-tSH-cWW-R
Number of instances in this motif group
28

Unit IDs

9F1D|1|B5|G|2690
9F1D|1|B5|G|2691
9F1D|1|B5|A|2692
9F1D|1|B5|A|2693
*
9F1D|1|B5|U|3572
9F1D|1|B5|OMC|3573

Current chains

Chain B5
28S rRNA

Nearby chains

Chain BB
Ribosomal protein L3
Chain BV
Ribosomal protein L23

Coloring options:


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