IL_9F1D_352

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AA(PSU)GAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_352 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.1898

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9F1D|1|B5|PSU|3447
9F1D|1|B5|C|3448
9F1D|1|B5|A|3449
9F1D|1|B5|A2M|3450
9F1D|1|B5|A|3451
9F1D|1|B5|G|3452
9F1D|1|B5|U|3453
*
9F1D|1|B5|A|3464
9F1D|1|B5|A|3465
9F1D|1|B5|PSU|3466
9F1D|1|B5|G|3467
9F1D|1|B5|A|3468
9F1D|1|B5|A|3469
9F1D|1|B5|G|3470

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

Large ribosomal subunit protein uL2

Chain Bi

60S ribosomal protein L36

Chain Bo

Large ribosomal subunit protein eL42