IL_9F1D_354

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

CCC*GGCG

Length

7 nucleotides

Bulged bases

9F1D|1|B5|C|3891

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_354 not in the Motif Atlas

Geometric match to IL_4V88_419

Geometric discrepancy: 0.2608

The information below is about IL_4V88_419

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

9F1D|1|B5|C|3866
9F1D|1|B5|C|3867
9F1D|1|B5|C|3868
*
9F1D|1|B5|G|3889
9F1D|1|B5|G|3890
9F1D|1|B5|C|3891
9F1D|1|B5|G|3892

Current chains

Chain B5

28S rRNA

Nearby chains