IL_9F1D_355

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GA(PSU)*AC

Length

5 nucleotides

Bulged bases

9F1D|1|B5|A|4038

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_355 not in the Motif Atlas

Geometric match to IL_8C3A_014

Geometric discrepancy: 0.25

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9F1D|1|B5|G|4037
9F1D|1|B5|A|4038
9F1D|1|B5|PSU|4039
*
9F1D|1|B5|A|4063
9F1D|1|B5|C|4064

Current chains

Chain B5

28S rRNA

Nearby chains

Chain Bb

60S ribosomal protein L29

Chain Bo

Large ribosomal subunit protein eL42