IL_9F1D_365

3D structure

PDB id

9F1D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK

Experimental method

ELECTRON MICROSCOPY

Resolution

3.26 Å

Loop

Sequence

GAGCC*GGAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9F1D_365 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3058

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

9F1D|1|B5|G|4490
9F1D|1|B5|A|4491
9F1D|1|B5|G|4492
9F1D|1|B5|C|4493
9F1D|1|B5|C|4494
*
9F1D|1|B5|G|4692
9F1D|1|B5|G|4693
9F1D|1|B5|A|4694
9F1D|1|B5|A|4695
9F1D|1|B5|C|4696

Current chains

Chain B5

28S rRNA

Nearby chains

Chain B8

5.8S ribosomal RNA; 5.8S rRNA

Chain Bf

60S ribosomal protein L35a