IL_9FBV_019

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FBV_019 not in the Motif Atlas

Homologous match to IL_5J7L_020

Geometric discrepancy: 0.1273

The information below is about IL_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28026.3

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9FBV|1|A|U|409
9FBV|1|A|G|410
9FBV|1|A|A|411
9FBV|1|A|A|412
9FBV|1|A|G|413
9FBV|1|A|A|414
9FBV|1|A|A|415
9FBV|1|A|G|416
*
9FBV|1|A|U|427
9FBV|1|A|G|428
9FBV|1|A|U|429
9FBV|1|A|A|430
9FBV|1|A|A|431
9FBV|1|A|A|432
9FBV|1|A|G|433

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4