IL_9FBV_025

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9FBV|1|A|A|572

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FBV_025 not in the Motif Atlas

Homologous match to IL_5J7L_026

Geometric discrepancy: 0.0644

The information below is about IL_5J7L_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.6

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

4

Unit IDs

9FBV|1|A|C|569
9FBV|1|A|G|570
9FBV|1|A|U|571
9FBV|1|A|A|572
9FBV|1|A|A|573
9FBV|1|A|A|574
9FBV|1|A|G|575
*
9FBV|1|A|C|880
9FBV|1|A|G|881

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain H

Small ribosomal subunit protein uS8

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17