IL_9FBV_094

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FBV_094 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.1938

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

9FBV|1|a|G|875
9FBV|1|a|C|876
9FBV|1|a|A|877
9FBV|1|a|A|878
9FBV|1|a|G|879
*
9FBV|1|a|C|898
9FBV|1|a|A|899
9FBV|1|a|A|900
9FBV|1|a|C|901
9FBV|1|a|C|902

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain l

Large ribosomal subunit protein uL16