IL_9FBV_127

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9FBV|1|a|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FBV_127 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0482

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9FBV|1|a|C|1686
9FBV|1|a|G|1687
9FBV|1|a|U|1688
9FBV|1|a|A|1689
9FBV|1|a|A|1690
9FBV|1|a|C|1691
*
9FBV|1|a|G|1696
9FBV|1|a|G|1697
9FBV|1|a|A|1698
9FBV|1|a|G|1699
9FBV|1|a|A|1700
9FBV|1|a|A|1701
9FBV|1|a|G|1702

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2