IL_9FCO_014

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GG*UGACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FCO_014 not in the Motif Atlas

Homologous match to IL_4LFB_013

Geometric discrepancy: 0.0572

The information below is about IL_4LFB_013

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_06671.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

10

Unit IDs

9FCO|1|B|G|292
9FCO|1|B|G|293
*
9FCO|1|B|U|304
9FCO|1|B|G|305
9FCO|1|B|A|306
9FCO|1|B|C|307
9FCO|1|B|C|308

Current chains

Chain B

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16