IL_9FCO_018

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAGAA*UGUAAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FCO_018 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1193

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

9FCO|1|B|U|409
9FCO|1|B|G|410
9FCO|1|B|A|411
9FCO|1|B|A|412
9FCO|1|B|G|413
9FCO|1|B|A|414
9FCO|1|B|A|415
*
9FCO|1|B|U|427
9FCO|1|B|G|428
9FCO|1|B|U|429
9FCO|1|B|A|430
9FCO|1|B|A|431
9FCO|1|B|A|432
9FCO|1|B|G|433

Current chains

Chain B

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4