IL_9FCO_031
3D structure
- PDB id
- 9FCO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- AGAAU*GGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9FCO_031 not in the Motif Atlas
- Homologous match to IL_4LFB_065
- Geometric discrepancy: 0.075
- The information below is about IL_4LFB_065
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71154.2
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
9FCO|1|B|A|673
9FCO|1|B|G|674
9FCO|1|B|A|675
9FCO|1|B|A|676
9FCO|1|B|U|677
*
9FCO|1|B|G|713
9FCO|1|B|G|714
9FCO|1|B|A|715
9FCO|1|B|A|716
9FCO|1|B|U|717
Current chains
- Chain B
- 16S rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein bS6, fully modified isoform
- Chain K
- Small ribosomal subunit protein uS11
- Chain R
- Small ribosomal subunit protein bS18
- Chain U
- Small ribosomal subunit protein bS21
Coloring options: