IL_9FCO_034

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FCO_034 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.063

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

9FCO|1|B|C|779
9FCO|1|B|A|780
9FCO|1|B|A|781
9FCO|1|B|A|782
9FCO|1|B|C|783
*
9FCO|1|B|G|799
9FCO|1|B|G|800
9FCO|1|B|U|801
9FCO|1|B|A|802
9FCO|1|B|G|803

Current chains

Chain B

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain U

Small ribosomal subunit protein bS21