IL_9FCO_042

3D structure

PDB id

9FCO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Kasugamycin complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CAC*GUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FCO_042 not in the Motif Atlas

Geometric match to IL_406D_004

Geometric discrepancy: 0.2313

The information below is about IL_406D_004

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

9FCO|1|B|C|1409
9FCO|1|B|A|1410
9FCO|1|B|C|1411
*
9FCO|1|B|G|1489
9FCO|1|B|U|1490
9FCO|1|B|G|1491

Current chains

Chain B

16S rRNA

Nearby chains

Chain I

Translation initiation factor IF-1

Chain J

Translation initiation factor IF-3

Chain L

Small ribosomal subunit protein uS12