IL_9FDA_001
3D structure
- PDB id
- 9FDA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2 Å
Loop
- Sequence
- UGA*UA
- Length
- 5 nucleotides
- Bulged bases
- 9FDA|1|B|G|31
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9FDA_001 not in the Motif Atlas
- Homologous match to IL_5J7L_001
- Geometric discrepancy: 0.0885
- The information below is about IL_5J7L_001
- Detailed Annotation
- Single bulged G
- Broad Annotation
- No text annotation
- Motif group
- IL_00225.14
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 50
Unit IDs
9FDA|1|B|U|30
9FDA|1|B|G|31
9FDA|1|B|A|32
*
9FDA|1|B|U|552
9FDA|1|B|A|553
Current chains
- Chain B
- 16S rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS12
Coloring options: