IL_9FDA_021

3D structure

PDB id

9FDA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2 Å

Loop

Sequence

GGAGG*CGUUAC

Length

11 nucleotides

Bulged bases

9FDA|1|B|U|485

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FDA_021 not in the Motif Atlas

Homologous match to IL_5J7L_022

Geometric discrepancy: 0.1878

The information below is about IL_5J7L_022

Detailed Annotation

tSH-tHW-tWW

Broad Annotation

No text annotation

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9FDA|1|B|G|446
9FDA|1|B|G|447
9FDA|1|B|A|448
9FDA|1|B|G|449
9FDA|1|B|G|450
*
9FDA|1|B|C|483
9FDA|1|B|G|484
9FDA|1|B|U|485
9FDA|1|B|U|486
9FDA|1|B|A|487
9FDA|1|B|C|488

Current chains

Chain B

16S rRNA

Nearby chains

Chain D

Small ribosomal subunit protein uS4

Chain P

Small ribosomal subunit protein bS16