3D structure

PDB id
9FDA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of E. coli 30S-IF1-IF3-mRNA-Edeine complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2 Å

Loop

Sequence
GU(5MC)*GUC
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9FDA_042 not in the Motif Atlas
Homologous match to IL_5J7L_363
Geometric discrepancy: 0.1743
The information below is about IL_5J7L_363
Detailed Annotation
Isolated non-canonical cWW pair
Broad Annotation
No text annotation
Motif group
IL_87907.2
Basepair signature
cWW-cWW-cWW
Number of instances in this motif group
179

Unit IDs

9FDA|1|B|G|1405
9FDA|1|B|U|1406
9FDA|1|B|5MC|1407
*
9FDA|1|B|G|1494
9FDA|1|B|U|1495
9FDA|1|B|C|1496

Current chains

Chain B
16S rRNA

Nearby chains

Chain I
Translation initiation factor IF-1
Chain J
Translation initiation factor IF-3

Coloring options:


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