IL_9FQZ_080

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FQZ_080 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.0532

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9FQZ|1|L5|G|2358
9FQZ|1|L5|U|2359
9FQZ|1|L5|A|2360
9FQZ|1|L5|G|2361
9FQZ|1|L5|U|2362
9FQZ|1|L5|A2M|2363
9FQZ|1|L5|OMG|2364
*
9FQZ|1|L5|C|3858
9FQZ|1|L5|G|3859
9FQZ|1|L5|A|3860
9FQZ|1|L5|A|3861
9FQZ|1|L5|A|3862
9FQZ|1|L5|C|3863

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17