IL_9FQZ_089

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CGC*GG

Length

5 nucleotides

Bulged bases

9FQZ|1|L5|G|2652

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9FQZ_089 not in the Motif Atlas

Homologous match to IL_8GLP_100

Geometric discrepancy: 0.1804

The information below is about IL_8GLP_100

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

83

Unit IDs

9FQZ|1|L5|C|2651
9FQZ|1|L5|G|2652
9FQZ|1|L5|C|2653
*
9FQZ|1|L5|G|2681
9FQZ|1|L5|G|2682

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain Lg

60S ribosomal protein L34

Chain Lp

60S ribosomal protein L37a