IL_9FQZ_108

3D structure

PDB id

9FQZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF HCT15 POLYSOMES BOUND TO EEF2, EBP1, AND SERBP1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9FQZ|1|L5|A2M|3785, 9FQZ|1|L5|C|3791, 9FQZ|1|L5|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9FQZ|1|L5|C|3781
9FQZ|1|L5|5MC|3782
9FQZ|1|L5|A|3783
9FQZ|1|L5|A|3784
9FQZ|1|L5|A2M|3785
9FQZ|1|L5|U|3786
9FQZ|1|L5|G|3787
9FQZ|1|L5|C|3788
9FQZ|1|L5|C|3789
9FQZ|1|L5|U|3790
9FQZ|1|L5|C|3791
9FQZ|1|L5|OMG|3792
*
9FQZ|1|L5|OMC|3808
9FQZ|1|L5|G|3809
9FQZ|1|L5|C|3810
9FQZ|1|L5|G|3811

Current chains

Chain L5

LSU rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA